J5_6SV4_034
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 6SV4|1|ZS|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6SV4_034 not in the Motif Atlas
- Homologous match to J5_8CRE_001
- Geometric discrepancy: 0.0866
- The information below is about J5_8CRE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6SV4|1|ZQ|A|20
6SV4|1|ZQ|G|21
6SV4|1|ZQ|G|22
*
6SV4|1|ZS|C|35
6SV4|1|ZS|G|36
6SV4|1|ZS|A|37
6SV4|1|ZS|U|38
6SV4|1|ZS|G|39
6SV4|1|ZS|A|40
6SV4|1|ZS|A|41
6SV4|1|ZS|G|42
*
6SV4|1|ZS|U|102
6SV4|1|ZS|G|103
6SV4|1|ZS|A|104
6SV4|1|ZS|A|105
6SV4|1|ZS|C|106
6SV4|1|ZS|G|107
*
6SV4|1|ZS|C|115
6SV4|1|ZS|G|116
*
6SV4|1|ZS|C|137
6SV4|1|ZS|A|138
6SV4|1|ZS|U|139
Current chains
- Chain ZQ
- 25S rRNA
- Chain ZS
- 5.8S rRNA
Nearby chains
- Chain ZP
- 60S ribosomal protein L35-A
- Chain zF
- 60S ribosomal protein L37-A
- Chain zH
- 60S ribosomal protein L25
- Chain zL
- 60S ribosomal protein L39
- Chain zQ
- 60S ribosomal protein L15-A
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