J5_6SWC_001

3D structure

PDB id

6SWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

IC2B model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUAU*AGUG*CUUUUC*GGAAUAAGGGCU*GGCC(4AC)GAG

Length

34 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SWC|1|2|C|42
6SWC|1|2|U|43
6SWC|1|2|A|44
6SWC|1|2|U|45
*
6SWC|1|2|A|412
6SWC|1|2|G|413
6SWC|1|2|U|414
6SWC|1|2|G|415
*
6SWC|1|2|C|433
6SWC|1|2|U|434
6SWC|1|2|U|435
6SWC|1|2|U|436
6SWC|1|2|U|437
6SWC|1|2|C|438
*
6SWC|1|2|G|458
6SWC|1|2|G|459
6SWC|1|2|A|460
6SWC|1|2|A|461
6SWC|1|2|U|462
6SWC|1|2|A|463
6SWC|1|2|A|464
6SWC|1|2|G|465
6SWC|1|2|G|466
6SWC|1|2|G|467
6SWC|1|2|C|468
6SWC|1|2|U|469
*
6SWC|1|2|G|507
6SWC|1|2|G|508
6SWC|1|2|C|509
6SWC|1|2|C|510
6SWC|1|2|4AC|511
6SWC|1|2|G|512
6SWC|1|2|A|513
6SWC|1|2|G|514

Current chains

Chain 2

16S ribosomal rRNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain N

30S ribosomal protein S12

Chain V

30S ribosomal protein S24e