J5_6SWC_001
3D structure
- PDB id
- 6SWC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- IC2B model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUAU*AGUG*CUUUUC*GGAAUAAGGGCU*GGCC(4AC)GAG
- Length
- 34 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 4AC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SWC|1|2|C|42
6SWC|1|2|U|43
6SWC|1|2|A|44
6SWC|1|2|U|45
*
6SWC|1|2|A|412
6SWC|1|2|G|413
6SWC|1|2|U|414
6SWC|1|2|G|415
*
6SWC|1|2|C|433
6SWC|1|2|U|434
6SWC|1|2|U|435
6SWC|1|2|U|436
6SWC|1|2|U|437
6SWC|1|2|C|438
*
6SWC|1|2|G|458
6SWC|1|2|G|459
6SWC|1|2|A|460
6SWC|1|2|A|461
6SWC|1|2|U|462
6SWC|1|2|A|463
6SWC|1|2|A|464
6SWC|1|2|G|465
6SWC|1|2|G|466
6SWC|1|2|G|467
6SWC|1|2|C|468
6SWC|1|2|U|469
*
6SWC|1|2|G|507
6SWC|1|2|G|508
6SWC|1|2|C|509
6SWC|1|2|C|510
6SWC|1|2|4AC|511
6SWC|1|2|G|512
6SWC|1|2|A|513
6SWC|1|2|G|514
Current chains
- Chain 2
- 16S ribosomal rRNA
Nearby chains
- Chain D
- 30S ribosomal protein S4
- Chain N
- 30S ribosomal protein S12
- Chain V
- 30S ribosomal protein S24e
Coloring options: