J5_6SWC_002

3D structure

PDB id

6SWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

IC2B model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCGAG*CGGACGGC*GAU*AGG*CGCAGC

Length

25 nucleotides

Bulged bases

6SWC|1|2|A|105

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SWC|1|2|G|65
6SWC|1|2|C|66
6SWC|1|2|G|67
6SWC|1|2|A|68
6SWC|1|2|G|69
*
6SWC|1|2|C|102
6SWC|1|2|G|103
6SWC|1|2|G|104
6SWC|1|2|A|105
6SWC|1|2|C|106
6SWC|1|2|G|107
6SWC|1|2|G|108
6SWC|1|2|C|109
*
6SWC|1|2|G|323
6SWC|1|2|A|324
6SWC|1|2|U|325
*
6SWC|1|2|A|346
6SWC|1|2|G|347
6SWC|1|2|G|348
*
6SWC|1|2|C|359
6SWC|1|2|G|360
6SWC|1|2|C|361
6SWC|1|2|A|362
6SWC|1|2|G|363
6SWC|1|2|C|364

Current chains

Chain 2

16S ribosomal rRNA

Nearby chains

Chain E

30S ribosomal protein S4e

Chain G

30S ribosomal protein S6e

Chain J

30S ribosomal protein S8e