3D structure

PDB id
6SZS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis
Experimental method
ELECTRON MICROSCOPY
Resolution
3.06 Å

Loop

Sequence
GCAAAAUGG*CG*UC*GAUACCAGC*GGC
Length
25 nucleotides
Bulged bases
6SZS|1|A|U|1758, 6SZS|1|A|G|1763
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6SZS_004 not in the Motif Atlas
Homologous match to J5_5J7L_016
Geometric discrepancy: 0.0593
The information below is about J5_5J7L_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_62523.6
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

6SZS|1|A|G|1674
6SZS|1|A|C|1675
6SZS|1|A|A|1676
6SZS|1|A|A|1677
6SZS|1|A|A|1678
6SZS|1|A|A|1679
6SZS|1|A|U|1680
6SZS|1|A|G|1681
6SZS|1|A|G|1682
*
6SZS|1|A|C|1706
6SZS|1|A|G|1707
*
6SZS|1|A|U|1751
6SZS|1|A|C|1752
*
6SZS|1|A|G|1756
6SZS|1|A|A|1757
6SZS|1|A|U|1758
6SZS|1|A|A|1759
6SZS|1|A|C|1760
6SZS|1|A|C|1761
6SZS|1|A|A|1762
6SZS|1|A|G|1763
6SZS|1|A|C|1764
*
6SZS|1|A|G|1988
6SZS|1|A|G|1989
6SZS|1|A|C|1990

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain D
50S ribosomal protein L3
Chain K
50S ribosomal protein L14
Chain P
50S ribosomal protein L19
Chain a
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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