J5_6T59_001
3D structure
- PDB id
- 6T59 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- GUG*CGAUGAAG*CGAACG*CG*UAC
- Length
- 22 nucleotides
- Bulged bases
- 6T59|1|84|U|38
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6T59_001 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.1155
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.1
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
6T59|1|54|G|19
6T59|1|54|U|20
6T59|1|54|G|21
*
6T59|1|84|C|35
6T59|1|84|G|36
6T59|1|84|A|37
6T59|1|84|U|38
6T59|1|84|G|39
6T59|1|84|A|40
6T59|1|84|A|41
6T59|1|84|G|42
*
6T59|1|84|C|101
6T59|1|84|G|102
6T59|1|84|A|103
6T59|1|84|A|104
6T59|1|84|C|105
6T59|1|84|G|106
*
6T59|1|84|C|113
6T59|1|84|G|114
*
6T59|1|84|U|136
6T59|1|84|A|137
6T59|1|84|C|138
Current chains
- Chain 54
- 28S ribosomal RNA
- Chain 84
- 5.8S ribosomal RNA
Nearby chains
- Chain N3
- Ribosomal protein L15
- Chain X3
- uL23
- Chain h3
- uL29
- Chain j3
- Ribosomal protein L37
- Chain l3
- eL39
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