J5_6T59_002

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CC*GAGGGAG*UGCGCCGCGCUCUCC*GCCGG*CCACGCGUCCCCCGCGAGCGCACGGGG

Length

56 nucleotides

Bulged bases

6T59|1|54|G|959, 6T59|1|54|C|972, 6T59|1|54|C|1237, 6T59|1|54|G|1271, 6T59|1|54|C|1272, 6T59|1|54|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6T59|1|54|C|712
6T59|1|54|C|713
*
6T59|1|54|G|955
6T59|1|54|A|956
6T59|1|54|G|957
6T59|1|54|G|958
6T59|1|54|G|959
6T59|1|54|A|960
6T59|1|54|G|961
*
6T59|1|54|U|971
6T59|1|54|G|971|||A
6T59|1|54|C|972
6T59|1|54|G|973
6T59|1|54|C|974
6T59|1|54|C|975
6T59|1|54|G|976
6T59|1|54|C|977
6T59|1|54|G|978
6T59|1|54|C|979
6T59|1|54|U|980
6T59|1|54|C|981
6T59|1|54|U|982
6T59|1|54|C|983
6T59|1|54|C|984
*
6T59|1|54|G|1070
6T59|1|54|C|1071
6T59|1|54|C|1072
6T59|1|54|G|1073
6T59|1|54|G|1074
*
6T59|1|54|C|1236
6T59|1|54|C|1237
6T59|1|54|A|1238
6T59|1|54|C|1239
6T59|1|54|G|1244
6T59|1|54|C|1245
6T59|1|54|G|1246
6T59|1|54|U|1247
6T59|1|54|C|1248
6T59|1|54|C|1249
6T59|1|54|C|1250
6T59|1|54|C|1251
6T59|1|54|C|1252
6T59|1|54|G|1271
6T59|1|54|C|1272
6T59|1|54|G|1273
6T59|1|54|A|1274
6T59|1|54|G|1275
6T59|1|54|C|1276
6T59|1|54|G|1277
6T59|1|54|C|1278
6T59|1|54|A|1279
6T59|1|54|C|1280
6T59|1|54|G|1281
6T59|1|54|G|1282
6T59|1|54|G|1283
6T59|1|54|G|1284

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain E3

60S ribosomal protein L6

Chain F3

Ul30

Chain b3

eL29

Chain e3

eL32