J5_6T59_004
3D structure
- PDB id
- 6T59 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- GCAAGCCGG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 6T59|1|54|G|3620, 6T59|1|54|G|3625
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6T59_004 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.1148
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6T59|1|54|G|2855
6T59|1|54|C|2856
6T59|1|54|A|2857
6T59|1|54|A|2858
6T59|1|54|G|2859
6T59|1|54|C|2860
6T59|1|54|C|2861
6T59|1|54|G|2862
6T59|1|54|G|2863
*
6T59|1|54|U|2887
6T59|1|54|G|2888
*
6T59|1|54|U|3613
6T59|1|54|G|3614
*
6T59|1|54|C|3618
6T59|1|54|G|3619
6T59|1|54|G|3620
6T59|1|54|A|3621
6T59|1|54|C|3622
6T59|1|54|C|3623
6T59|1|54|A|3624
6T59|1|54|G|3625
6T59|1|54|G|3626
*
6T59|1|54|C|3835
6T59|1|54|A|3836
6T59|1|54|C|3837
Current chains
- Chain 54
- 28S ribosomal RNA
Nearby chains
- Chain B3
- uL3
- Chain R3
- eL19
- Chain V3
- Ribosomal protein L23
- Chain W3
- eL24
Coloring options: