J5_6T59_006
3D structure
- PDB id
- 6T59 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 6T59|1|54|G|3922, 6T59|1|54|A|4376, 6T59|1|54|G|4377, 6T59|1|54|A|4378, 6T59|1|54|A|4379
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6T59_006 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.3124
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
6T59|1|54|U|3920
6T59|1|54|U|3921
6T59|1|54|G|3922
6T59|1|54|A|3923
*
6T59|1|54|U|4188
6T59|1|54|U|4189
6T59|1|54|U|4190
6T59|1|54|G|4191
*
6T59|1|54|C|4204
6T59|1|54|A|4205
*
6T59|1|54|U|4227
6T59|1|54|G|4228
*
6T59|1|54|C|4375
6T59|1|54|A|4376
6T59|1|54|G|4377
6T59|1|54|A|4378
6T59|1|54|A|4379
6T59|1|54|A|4380
6T59|1|54|A|4381
Current chains
- Chain 54
- 28S ribosomal RNA
Nearby chains
- Chain 23
- Transfer RNA; tRNA
- Chain A3
- Ribosomal protein L8
- Chain N3
- Ribosomal protein L15
- Chain Q3
- eL18
- Chain T3
- eL21
- Chain a3
- uL15
- Chain b3
- eL29
- Chain o3
- eL42
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