J5_6T7I_003

3D structure

PDB id

6T7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG

Length

27 nucleotides

Bulged bases

6T7I|1|C1|U|719, 6T7I|1|C1|A|784, 6T7I|1|C1|G|785

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6T7I_003 not in the Motif Atlas

Homologous match to J5_8P9A_012

Geometric discrepancy: 0.0792

The information below is about J5_8P9A_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_56629.1

Basepair signature

cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6T7I|1|C1|C|675
6T7I|1|C1|G|676
6T7I|1|C1|A|677
6T7I|1|C1|G|678
*
6T7I|1|C1|C|702
6T7I|1|C1|G|703
6T7I|1|C1|U|704
6T7I|1|C1|A|705
6T7I|1|C1|A|706
*
6T7I|1|C1|U|713
6T7I|1|C1|G|714
6T7I|1|C1|A|715
6T7I|1|C1|A|716
6T7I|1|C1|C|717
6T7I|1|C1|G|718
6T7I|1|C1|U|719
6T7I|1|C1|A|720
6T7I|1|C1|G|721
*
6T7I|1|C1|C|749
6T7I|1|C1|G|750
6T7I|1|C1|A|751
*
6T7I|1|C1|U|782
6T7I|1|C1|A|783
6T7I|1|C1|A|784
6T7I|1|C1|G|785
6T7I|1|C1|A|786
6T7I|1|C1|G|787

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4-A

Chain LL

60S ribosomal protein L13-A

Chain LQ

60S ribosomal protein L18-A

Chain La

60S ribosomal protein L28

Chain Lb

60S ribosomal protein L29

Chain Li

60S ribosomal protein L36-A