J5_6T83_002
3D structure
- PDB id
- 6T83 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast disome (di-ribosome) stalled on poly(A) tract.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 6T83|1|1b|U|1436
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6T83_002 not in the Motif Atlas
- Homologous match to J5_8C3A_002
- Geometric discrepancy: 0.086
- The information below is about J5_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6T83|1|1b|G|658
6T83|1|1b|G|659
6T83|1|1b|A|660
6T83|1|1b|G|661
6T83|1|1b|U|662
6T83|1|1b|C|663
*
6T83|1|1b|G|799
6T83|1|1b|G|800
6T83|1|1b|A|801
6T83|1|1b|C|802
*
6T83|1|1b|G|941
6T83|1|1b|U|942
6T83|1|1b|U|943
6T83|1|1b|C|944
*
6T83|1|1b|G|1375
6T83|1|1b|C|1376
*
6T83|1|1b|G|1431
6T83|1|1b|C|1432
6T83|1|1b|A|1433
6T83|1|1b|G|1434
6T83|1|1b|A|1435
6T83|1|1b|U|1436
6T83|1|1b|C|1437
Current chains
- Chain 1b
- 25S rRNA
Nearby chains
- Chain 3b
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Cy
- 60S ribosomal protein L4-A
- Chain Ly
- 60S ribosomal protein L13-A
- Chain Ny
- 60S ribosomal protein L15-A
- Chain ay
- 60S ribosomal protein L28
- Chain ey
- 60S ribosomal protein L32
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