3D structure

PDB id
6T83 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of yeast disome (di-ribosome) stalled on poly(A) tract.
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
GGAGUC*GGAC*GUUC*GC*GCAGAUC
Length
23 nucleotides
Bulged bases
6T83|1|1b|U|1436
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6T83_002 not in the Motif Atlas
Homologous match to J5_8C3A_002
Geometric discrepancy: 0.086
The information below is about J5_8C3A_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6T83|1|1b|G|658
6T83|1|1b|G|659
6T83|1|1b|A|660
6T83|1|1b|G|661
6T83|1|1b|U|662
6T83|1|1b|C|663
*
6T83|1|1b|G|799
6T83|1|1b|G|800
6T83|1|1b|A|801
6T83|1|1b|C|802
*
6T83|1|1b|G|941
6T83|1|1b|U|942
6T83|1|1b|U|943
6T83|1|1b|C|944
*
6T83|1|1b|G|1375
6T83|1|1b|C|1376
*
6T83|1|1b|G|1431
6T83|1|1b|C|1432
6T83|1|1b|A|1433
6T83|1|1b|G|1434
6T83|1|1b|A|1435
6T83|1|1b|U|1436
6T83|1|1b|C|1437

Current chains

Chain 1b
25S rRNA

Nearby chains

Chain 3b
5.8S ribosomal RNA; 5.8S rRNA
Chain Cy
60S ribosomal protein L4-A
Chain Ly
60S ribosomal protein L13-A
Chain Ny
60S ribosomal protein L15-A
Chain ay
60S ribosomal protein L28
Chain ey
60S ribosomal protein L32

Coloring options:


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