J5_6T83_003
3D structure
- PDB id
- 6T83 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast disome (di-ribosome) stalled on poly(A) tract.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 6T83|1|1b|U|719, 6T83|1|1b|A|784, 6T83|1|1b|G|785
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6T83_003 not in the Motif Atlas
- Homologous match to J5_8P9A_012
- Geometric discrepancy: 0.1091
- The information below is about J5_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_56629.1
- Basepair signature
- cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6T83|1|1b|C|675
6T83|1|1b|G|676
6T83|1|1b|A|677
6T83|1|1b|G|678
*
6T83|1|1b|C|702
6T83|1|1b|G|703
6T83|1|1b|U|704
6T83|1|1b|A|705
6T83|1|1b|A|706
*
6T83|1|1b|U|713
6T83|1|1b|G|714
6T83|1|1b|A|715
6T83|1|1b|A|716
6T83|1|1b|C|717
6T83|1|1b|G|718
6T83|1|1b|U|719
6T83|1|1b|A|720
6T83|1|1b|G|721
*
6T83|1|1b|C|749
6T83|1|1b|G|750
6T83|1|1b|A|751
*
6T83|1|1b|U|782
6T83|1|1b|A|783
6T83|1|1b|A|784
6T83|1|1b|G|785
6T83|1|1b|A|786
6T83|1|1b|G|787
Current chains
- Chain 1b
- 25S rRNA
Nearby chains
- Chain Cy
- 60S ribosomal protein L4-A
- Chain Ly
- 60S ribosomal protein L13-A
- Chain Qy
- 60S ribosomal protein L18-A
- Chain ay
- 60S ribosomal protein L28
- Chain by
- 60S ribosomal protein L29
- Chain ib
- 60S ribosomal protein L36-A
Coloring options: