J5_6T83_008
3D structure
- PDB id
- 6T83 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast disome (di-ribosome) stalled on poly(A) tract.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 6T83|1|2b|U|56, 6T83|1|2b|A|93, 6T83|1|2b|C|424
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6T83_008 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.0985
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6T83|1|2b|C|54
6T83|1|2b|A|55
6T83|1|2b|U|56
6T83|1|2b|G|57
*
6T83|1|2b|C|90
6T83|1|2b|G|91
6T83|1|2b|A|92
6T83|1|2b|A|93
6T83|1|2b|U|94
6T83|1|2b|G|95
6T83|1|2b|G|96
6T83|1|2b|C|97
*
6T83|1|2b|G|386
6T83|1|2b|A|387
6T83|1|2b|G|388
*
6T83|1|2b|C|409
6T83|1|2b|A|410
6T83|1|2b|C|411
*
6T83|1|2b|G|422
6T83|1|2b|G|423
6T83|1|2b|C|424
6T83|1|2b|A|425
6T83|1|2b|G|426
Current chains
- Chain 2b
- 18S rRNA
Nearby chains
- Chain Eb
- 40S ribosomal protein S4-A
- Chain Gb
- 40S ribosomal protein S6-A
- Chain Ib
- 40S ribosomal protein S8-A
- Chain Jb
- 40S ribosomal protein S9-A
- Chain Vy
- 60S ribosomal protein L23-A
- Chain Yb
- 40S ribosomal protein S24-A
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