J5_6TB3_008
3D structure
- PDB id
- 6TB3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 6TB3|1|BQ|U|719, 6TB3|1|BQ|A|784, 6TB3|1|BQ|G|785
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6TB3_008 not in the Motif Atlas
- Homologous match to J5_8P9A_012
- Geometric discrepancy: 0.0568
- The information below is about J5_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_23272.1
- Basepair signature
- cWW-F-F-F-F-cWW-cWW-F-F-F-cWW-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6TB3|1|BQ|C|675
6TB3|1|BQ|G|676
6TB3|1|BQ|A|677
6TB3|1|BQ|G|678
*
6TB3|1|BQ|C|702
6TB3|1|BQ|G|703
6TB3|1|BQ|U|704
6TB3|1|BQ|A|705
6TB3|1|BQ|A|706
*
6TB3|1|BQ|U|713
6TB3|1|BQ|G|714
6TB3|1|BQ|A|715
6TB3|1|BQ|A|716
6TB3|1|BQ|C|717
6TB3|1|BQ|G|718
6TB3|1|BQ|U|719
6TB3|1|BQ|A|720
6TB3|1|BQ|G|721
*
6TB3|1|BQ|C|749
6TB3|1|BQ|G|750
6TB3|1|BQ|A|751
*
6TB3|1|BQ|U|782
6TB3|1|BQ|A|783
6TB3|1|BQ|A|784
6TB3|1|BQ|G|785
6TB3|1|BQ|A|786
6TB3|1|BQ|G|787
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AC
- 60S ribosomal protein L36-A
- Chain AJ
- 60S ribosomal protein L13-A
- Chain AR
- 60S ribosomal protein L28
- Chain AV
- 60S ribosomal protein L29
- Chain BB
- 60S ribosomal protein L18-A
- Chain BE
- 60S ribosomal protein L4-A
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