J5_6TBV_007

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

6TBV|1|23S1|U|1758, 6TBV|1|23S1|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6TBV_007 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0536

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6TBV|1|23S1|G|1674
6TBV|1|23S1|C|1675
6TBV|1|23S1|A|1676
6TBV|1|23S1|A|1677
6TBV|1|23S1|A|1678
6TBV|1|23S1|A|1679
6TBV|1|23S1|U|1680
6TBV|1|23S1|G|1681
6TBV|1|23S1|G|1682
*
6TBV|1|23S1|C|1706
6TBV|1|23S1|G|1707
*
6TBV|1|23S1|U|1751
6TBV|1|23S1|C|1752
*
6TBV|1|23S1|G|1756
6TBV|1|23S1|A|1757
6TBV|1|23S1|U|1758
6TBV|1|23S1|A|1759
6TBV|1|23S1|C|1760
6TBV|1|23S1|C|1761
6TBV|1|23S1|A|1762
6TBV|1|23S1|G|1763
6TBV|1|23S1|C|1764
*
6TBV|1|23S1|G|1988
6TBV|1|23S1|G|1989
6TBV|1|23S1|C|1990

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain 16S1

Small subunit ribosomal RNA; SSU rRNA

Chain L031

50S ribosomal protein L3

Chain L141

50S ribosomal protein L14

Chain L191

50S ribosomal protein L19