J5_6TC3_002

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6TC3_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0677

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6TC3|1|16S1|C|36
6TC3|1|16S1|U|37
6TC3|1|16S1|G|38
6TC3|1|16S1|G|39
*
6TC3|1|16S1|C|403
6TC3|1|16S1|G|404
6TC3|1|16S1|U|405
6TC3|1|16S1|G|406
*
6TC3|1|16S1|C|436
6TC3|1|16S1|U|437
6TC3|1|16S1|U|438
6TC3|1|16S1|U|439
6TC3|1|16S1|C|440
6TC3|1|16S1|A|441
6TC3|1|16S1|G|442
*
6TC3|1|16S1|C|492
6TC3|1|16S1|A|493
6TC3|1|16S1|G|494
6TC3|1|16S1|A|495
6TC3|1|16S1|A|496
6TC3|1|16S1|G|497
6TC3|1|16S1|A|498
6TC3|1|16S1|A|499
6TC3|1|16S1|G|500
*
6TC3|1|16S1|C|545
6TC3|1|16S1|A|546
6TC3|1|16S1|A|547
6TC3|1|16S1|G|548

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain S041

30S ribosomal protein S4

Chain S121

30S ribosomal protein S12