J5_6TC3_004

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6TC3|1|23S1|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6TC3_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0492

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6TC3|1|23S1|C|47
6TC3|1|23S1|G|48
6TC3|1|23S1|A|49
6TC3|1|23S1|U|50
6TC3|1|23S1|G|51
6TC3|1|23S1|A|52
6TC3|1|23S1|A|53
6TC3|1|23S1|G|54
*
6TC3|1|23S1|C|116
6TC3|1|23S1|G|117
6TC3|1|23S1|A|118
6TC3|1|23S1|A|119
6TC3|1|23S1|U|120
6TC3|1|23S1|G|121
*
6TC3|1|23S1|C|130
6TC3|1|23S1|A|131
*
6TC3|1|23S1|U|148
6TC3|1|23S1|A|149
6TC3|1|23S1|U|150
*
6TC3|1|23S1|A|176
6TC3|1|23S1|G|177
6TC3|1|23S1|G|178

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L341

50S ribosomal protein L34