J5_6TH6_008

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CGAG*CGCAG*CGACAGG*CGG*CGGAG

Length

24 nucleotides

Bulged bases

6TH6|1|BA|A|734, 6TH6|1|BA|G|780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6TH6_008 not in the Motif Atlas

Homologous match to J5_4V9F_005

Geometric discrepancy: 0.1594

The information below is about J5_4V9F_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_63867.1

Basepair signature

cWW-F-F-F-F-cWW-cHW-cWW-F-F-cWW-F-cWW-cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

6TH6|1|BA|C|692
6TH6|1|BA|G|693
6TH6|1|BA|A|694
6TH6|1|BA|G|695
*
6TH6|1|BA|C|719
6TH6|1|BA|G|720
6TH6|1|BA|C|721
6TH6|1|BA|A|722
6TH6|1|BA|G|723
*
6TH6|1|BA|C|730
6TH6|1|BA|G|731
6TH6|1|BA|A|732
6TH6|1|BA|C|733
6TH6|1|BA|A|734
6TH6|1|BA|G|735
6TH6|1|BA|G|736
*
6TH6|1|BA|C|761
6TH6|1|BA|G|762
6TH6|1|BA|G|763
*
6TH6|1|BA|C|778
6TH6|1|BA|G|779
6TH6|1|BA|G|780
6TH6|1|BA|A|781
6TH6|1|BA|G|782

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BO

50S ribosomal protein L15

Chain BR

50S ribosomal protein L18e