J5_6TPQ_005
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- GCAAAAUGA*UG*CC*GUGAAUAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 6TPQ|1|U|G|1785, 6TPQ|1|U|G|1790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6TPQ_005 not in the Motif Atlas
- Homologous match to J5_4WF9_005
- Geometric discrepancy: 0.0966
- The information below is about J5_4WF9_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
6TPQ|1|U|G|1717
6TPQ|1|U|C|1718
6TPQ|1|U|A|1719
6TPQ|1|U|A|1720
6TPQ|1|U|A|1721
6TPQ|1|U|A|1722
6TPQ|1|U|U|1723
6TPQ|1|U|G|1724
6TPQ|1|U|A|1725
*
6TPQ|1|U|U|1749
6TPQ|1|U|G|1750
*
6TPQ|1|U|C|1778
6TPQ|1|U|C|1779
*
6TPQ|1|U|G|1783
6TPQ|1|U|U|1784
6TPQ|1|U|G|1785
6TPQ|1|U|A|1786
6TPQ|1|U|A|1787
6TPQ|1|U|U|1788
6TPQ|1|U|A|1789
6TPQ|1|U|G|1790
6TPQ|1|U|G|1791
*
6TPQ|1|U|C|2015
6TPQ|1|U|A|2016
6TPQ|1|U|C|2017
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain X
- 50S ribosomal protein L3
- Chain d
- 50S ribosomal protein L14
- Chain i
- 50S ribosomal protein L19
Coloring options: