J5_6TPQ_007
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 6TPQ|1|U|U|2103, 6TPQ|1|U|G|2455, 6TPQ|1|U|G|2456, 6TPQ|1|U|A|2457, 6TPQ|1|U|U|2458
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6TPQ_007 not in the Motif Atlas
- Homologous match to J5_7A0S_007
- Geometric discrepancy: 0.104
- The information below is about J5_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6TPQ|1|U|U|2101
6TPQ|1|U|U|2102
6TPQ|1|U|U|2103
6TPQ|1|U|A|2104
*
6TPQ|1|U|U|2270
6TPQ|1|U|U|2271
6TPQ|1|U|U|2272
6TPQ|1|U|G|2273
*
6TPQ|1|U|C|2285
6TPQ|1|U|G|2286
*
6TPQ|1|U|C|2308
6TPQ|1|U|G|2309
*
6TPQ|1|U|C|2454
6TPQ|1|U|G|2455
6TPQ|1|U|G|2456
6TPQ|1|U|A|2457
6TPQ|1|U|U|2458
6TPQ|1|U|A|2459
6TPQ|1|U|A|2460
6TPQ|1|U|A|2461
6TPQ|1|U|A|2462
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain W
- 50S ribosomal protein L2
- Chain e
- 50S ribosomal protein L15
- Chain o
- 50S ribosomal protein L27
- Chain s
- 50S ribosomal protein L35
- Chain u
- 50S ribosomal protein L28
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