J5_6U48_001

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6U48|1|CA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6U48_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0602

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6U48|1|CA|C|47
6U48|1|CA|G|48
6U48|1|CA|A|49
6U48|1|CA|U|50
6U48|1|CA|G|51
6U48|1|CA|A|52
6U48|1|CA|A|53
6U48|1|CA|G|54
*
6U48|1|CA|C|116
6U48|1|CA|G|117
6U48|1|CA|A|118
6U48|1|CA|A|119
6U48|1|CA|U|120
6U48|1|CA|G|121
*
6U48|1|CA|C|130
6U48|1|CA|A|131
*
6U48|1|CA|U|148
6U48|1|CA|A|149
6U48|1|CA|U|150
*
6U48|1|CA|A|176
6U48|1|CA|G|177
6U48|1|CA|G|178

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C3

50S ribosomal protein bL34