J5_6U48_005

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GAAAGACC*GGA(H2U)AACA*UCG(2MA)(PSU)GU*GUUUAG*CGGUCC

Length

35 nucleotides

Bulged bases

6U48|1|CA|A|2448, 6U48|1|CA|U|2585, 6U48|1|CA|U|2609

QA status

Modified nucleotides: H2U, 2MA, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6U48|1|CA|G|2057
6U48|1|CA|A|2058
6U48|1|CA|A|2059
6U48|1|CA|A|2060
6U48|1|CA|G|2061
6U48|1|CA|A|2062
6U48|1|CA|C|2063
6U48|1|CA|C|2064
*
6U48|1|CA|G|2446
6U48|1|CA|G|2447
6U48|1|CA|A|2448
6U48|1|CA|H2U|2449
6U48|1|CA|A|2450
6U48|1|CA|A|2451
6U48|1|CA|C|2452
6U48|1|CA|A|2453
*
6U48|1|CA|U|2500
6U48|1|CA|C|2501
6U48|1|CA|G|2502
6U48|1|CA|2MA|2503
6U48|1|CA|PSU|2504
6U48|1|CA|G|2505
6U48|1|CA|U|2506
*
6U48|1|CA|G|2583
6U48|1|CA|U|2584
6U48|1|CA|U|2585
6U48|1|CA|U|2586
6U48|1|CA|A|2587
6U48|1|CA|G|2588
*
6U48|1|CA|C|2606
6U48|1|CA|G|2607
6U48|1|CA|G|2608
6U48|1|CA|U|2609
6U48|1|CA|C|2610
6U48|1|CA|C|2611

Current chains

Chain CA

23S rRNA

Nearby chains

Chain A

phazolicin

Chain C1

50S ribosomal protein bL32

Chain CC

50S ribosomal protein uL2

Chain CD

50S ribosomal protein uL3

Chain CE

50S ribosomal protein uL4

Chain CM

50S ribosomal protein uL15

Chain CT

50S ribosomal protein uL22