J5_6UCQ_020

3D structure

PDB id

6UCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome recycling complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6UCQ_020 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.1033

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6UCQ|1|2a|C|36
6UCQ|1|2a|U|37
6UCQ|1|2a|G|38
6UCQ|1|2a|G|39
*
6UCQ|1|2a|C|403
6UCQ|1|2a|U|404
6UCQ|1|2a|U|405
6UCQ|1|2a|G|406
*
6UCQ|1|2a|C|436
6UCQ|1|2a|U|437
6UCQ|1|2a|G|438
6UCQ|1|2a|A|439
6UCQ|1|2a|A|441
6UCQ|1|2a|C|442
*
6UCQ|1|2a|G|492
6UCQ|1|2a|G|493
6UCQ|1|2a|U|494
6UCQ|1|2a|A|495
6UCQ|1|2a|A|496
6UCQ|1|2a|U|498
6UCQ|1|2a|A|499
6UCQ|1|2a|G|500
*
6UCQ|1|2a|C|545
6UCQ|1|2a|G|546
6UCQ|1|2a|A|547
6UCQ|1|2a|G|548

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12

Chain 2v

50S ribosomal protein L9,Elongation factor G