J5_6UO1_007

3D structure

PDB id

6UO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UUUA*UUUG*CG*CG*CGGAUAAAA

Length

21 nucleotides

Bulged bases

6UO1|1|1A|U|2076, 6UO1|1|1A|G|2428, 6UO1|1|1A|G|2429, 6UO1|1|1A|A|2430, 6UO1|1|1A|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6UO1_007 not in the Motif Atlas

Homologous match to J5_9DFE_007

Geometric discrepancy: 0.0513

The information below is about J5_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_39529.1

Basepair signature

cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6UO1|1|1A|U|2074
6UO1|1|1A|U|2075
6UO1|1|1A|U|2076
6UO1|1|1A|A|2077
*
6UO1|1|1A|U|2243
6UO1|1|1A|U|2244
6UO1|1|1A|U|2245
6UO1|1|1A|G|2246
*
6UO1|1|1A|C|2258
6UO1|1|1A|G|2259
*
6UO1|1|1A|C|2281
6UO1|1|1A|G|2282
*
6UO1|1|1A|C|2427
6UO1|1|1A|G|2428
6UO1|1|1A|G|2429
6UO1|1|1A|A|2430
6UO1|1|1A|U|2431
6UO1|1|1A|A|2432
6UO1|1|1A|A|2433
6UO1|1|1A|A|2434
6UO1|1|1A|A|2435

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 10

50S ribosomal protein L27

Chain 11

50S ribosomal protein L28

Chain 16

50S ribosomal protein L33

Chain 1D

50S ribosomal protein L2

Chain 1P

50S ribosomal protein L15

Chain 1y

Transfer RNA; tRNA