3D structure

PDB id
6UO1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
CAAG*CGGACGGG*CAG*CAC*GGCAG
Length
23 nucleotides
Bulged bases
6UO1|1|1a|A|109, 6UO1|1|1a|C|352
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6UO1_009 not in the Motif Atlas
Homologous match to J5_6CZR_021
Geometric discrepancy: 0.0836
The information below is about J5_6CZR_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.5
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
5

Unit IDs

6UO1|1|1a|C|58
6UO1|1|1a|A|59
6UO1|1|1a|A|60
6UO1|1|1a|G|61
*
6UO1|1|1a|C|106
6UO1|1|1a|G|107
6UO1|1|1a|G|108
6UO1|1|1a|A|109
6UO1|1|1a|C|110
6UO1|1|1a|G|111
6UO1|1|1a|G|112
6UO1|1|1a|G|113
*
6UO1|1|1a|C|314
6UO1|1|1a|A|315
6UO1|1|1a|G|316
*
6UO1|1|1a|C|337
6UO1|1|1a|A|338
6UO1|1|1a|C|339
*
6UO1|1|1a|G|350
6UO1|1|1a|G|351
6UO1|1|1a|C|352
6UO1|1|1a|A|353
6UO1|1|1a|G|354

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1A
Large subunit ribosomal RNA; LSU rRNA
Chain 1O
50S ribosomal protein L14
Chain 1T
50S ribosomal protein L19
Chain 1p
30S ribosomal protein S16
Chain 1t
30S ribosomal protein S20

Coloring options:


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