J5_6UO1_010

3D structure

PDB id

6UO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

6UO1|1|2A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6UO1_010 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0697

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6UO1|1|2A|C|47
6UO1|1|2A|G|48
6UO1|1|2A|A|49
6UO1|1|2A|U|50
6UO1|1|2A|G|51
6UO1|1|2A|A|52
6UO1|1|2A|A|53
6UO1|1|2A|G|54
*
6UO1|1|2A|C|116
6UO1|1|2A|G|117
6UO1|1|2A|A|118
6UO1|1|2A|A|119
6UO1|1|2A|U|120
6UO1|1|2A|G|121
*
6UO1|1|2A|C|130
6UO1|1|2A|G|131
*
6UO1|1|2A|C|148
6UO1|1|2A|A|149
6UO1|1|2A|C|150
*
6UO1|1|2A|G|176
6UO1|1|2A|G|177
6UO1|1|2A|G|178

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23