J5_6UO1_018

3D structure

PDB id

6UO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6UO1_018 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0892

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6UO1|1|2a|C|36
6UO1|1|2a|U|37
6UO1|1|2a|G|38
6UO1|1|2a|G|39
*
6UO1|1|2a|C|403
6UO1|1|2a|U|404
6UO1|1|2a|U|405
6UO1|1|2a|G|406
*
6UO1|1|2a|C|436
6UO1|1|2a|U|437
6UO1|1|2a|G|438
6UO1|1|2a|A|439
6UO1|1|2a|A|441
6UO1|1|2a|C|442
*
6UO1|1|2a|G|492
6UO1|1|2a|G|493
6UO1|1|2a|U|494
6UO1|1|2a|A|495
6UO1|1|2a|A|496
6UO1|1|2a|U|498
6UO1|1|2a|A|499
6UO1|1|2a|G|500
*
6UO1|1|2a|C|545
6UO1|1|2a|G|546
6UO1|1|2a|A|547
6UO1|1|2a|G|548

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12