J5_6UZ7_008
3D structure
- PDB id
- 6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- K.lactis 80S ribosome with p/PE tRNA and eIF5B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 6UZ7|1|5|U|692, 6UZ7|1|5|A|755, 6UZ7|1|5|G|756
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6UZ7_008 not in the Motif Atlas
- Homologous match to J5_8P9A_012
- Geometric discrepancy: 0.1264
- The information below is about J5_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_56629.1
- Basepair signature
- cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6UZ7|1|5|C|648
6UZ7|1|5|G|649
6UZ7|1|5|A|650
6UZ7|1|5|G|651
*
6UZ7|1|5|C|675
6UZ7|1|5|G|676
6UZ7|1|5|U|677
6UZ7|1|5|A|678
6UZ7|1|5|A|679
*
6UZ7|1|5|U|686
6UZ7|1|5|G|687
6UZ7|1|5|A|688
6UZ7|1|5|A|689
6UZ7|1|5|C|690
6UZ7|1|5|G|691
6UZ7|1|5|U|692
6UZ7|1|5|A|693
6UZ7|1|5|G|694
*
6UZ7|1|5|C|720
6UZ7|1|5|G|721
6UZ7|1|5|A|722
*
6UZ7|1|5|U|753
6UZ7|1|5|A|754
6UZ7|1|5|A|755
6UZ7|1|5|G|756
6UZ7|1|5|A|757
6UZ7|1|5|G|758
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain AC
- KLLA0B07139p
- Chain AL
- 60S ribosomal protein L13
- Chain AQ
- KLLA0A07227p
- Chain Ba
- RPL28
- Chain Bb
- 60S ribosomal protein L29
- Chain Bi
- 60S ribosomal protein L36
Coloring options: