J5_6UZ7_009
3D structure
- PDB id
- 6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- K.lactis 80S ribosome with p/PE tRNA and eIF5B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 6UZ7|1|5|G|2085, 6UZ7|1|5|G|2090
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6UZ7_009 not in the Motif Atlas
- Homologous match to J5_8P9A_013
- Geometric discrepancy: 0.0851
- The information below is about J5_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.2
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
6UZ7|1|5|G|1875
6UZ7|1|5|C|1876
6UZ7|1|5|A|1877
6UZ7|1|5|A|1878
6UZ7|1|5|A|1879
6UZ7|1|5|A|1880
6UZ7|1|5|U|1881
6UZ7|1|5|A|1882
6UZ7|1|5|G|1883
*
6UZ7|1|5|U|1907
6UZ7|1|5|G|1908
*
6UZ7|1|5|U|2078
6UZ7|1|5|G|2079
*
6UZ7|1|5|C|2083
6UZ7|1|5|G|2084
6UZ7|1|5|G|2085
6UZ7|1|5|A|2086
6UZ7|1|5|C|2087
6UZ7|1|5|A|2088
6UZ7|1|5|A|2089
6UZ7|1|5|G|2090
6UZ7|1|5|G|2091
*
6UZ7|1|5|C|2300
6UZ7|1|5|A|2301
6UZ7|1|5|C|2302
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain AB
- 60S ribosomal protein L3
- Chain AR
- KLLA0E12453p
- Chain AV
- KLLA0E06997p
- Chain AW
- 60S ribosomal protein L24
- Chain I
- 40S ribosomal protein S8
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