3D structure

PDB id
6V39 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
CAAG*CGGACGGG*CAC*GAC*GGCAG
Length
23 nucleotides
Bulged bases
6V39|1|sN1|A|105, 6V39|1|sN1|C|348
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6V39_009 not in the Motif Atlas
Homologous match to J5_4LFB_002
Geometric discrepancy: 0.1353
The information below is about J5_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.6
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

6V39|1|sN1|C|60
6V39|1|sN1|A|61
6V39|1|sN1|A|62
6V39|1|sN1|G|63
*
6V39|1|sN1|C|102
6V39|1|sN1|G|103
6V39|1|sN1|G|104
6V39|1|sN1|A|105
6V39|1|sN1|C|106
6V39|1|sN1|G|107
6V39|1|sN1|G|108
6V39|1|sN1|G|109
*
6V39|1|sN1|C|310
6V39|1|sN1|A|311
6V39|1|sN1|C|312
*
6V39|1|sN1|G|333
6V39|1|sN1|A|334
6V39|1|sN1|C|335
*
6V39|1|sN1|G|346
6V39|1|sN1|G|347
6V39|1|sN1|C|348
6V39|1|sN1|A|349
6V39|1|sN1|G|350

Current chains

Chain sN1
16s Ribosomal RNA

Nearby chains

Chain J
50S ribosomal protein L14
Chain p
30S ribosomal protein S16
Chain t
30S ribosomal protein S20

Coloring options:


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