J5_6V39_009

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

6V39|1|sN1|A|105, 6V39|1|sN1|C|348

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6V39_009 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.1353

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6V39|1|sN1|C|60
6V39|1|sN1|A|61
6V39|1|sN1|A|62
6V39|1|sN1|G|63
*
6V39|1|sN1|C|102
6V39|1|sN1|G|103
6V39|1|sN1|G|104
6V39|1|sN1|A|105
6V39|1|sN1|C|106
6V39|1|sN1|G|107
6V39|1|sN1|G|108
6V39|1|sN1|G|109
*
6V39|1|sN1|C|310
6V39|1|sN1|A|311
6V39|1|sN1|C|312
*
6V39|1|sN1|G|333
6V39|1|sN1|A|334
6V39|1|sN1|C|335
*
6V39|1|sN1|G|346
6V39|1|sN1|G|347
6V39|1|sN1|C|348
6V39|1|sN1|A|349
6V39|1|sN1|G|350

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L14

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20