J5_6V3A_004
3D structure
- PDB id
- 6V3A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- GCAAAAUGG*CG*CC*GAAACCAGG*CGC
- Length
- 25 nucleotides
- Bulged bases
- 6V3A|1|AN1|A|1754, 6V3A|1|AN1|G|1759
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6V3A_004 not in the Motif Atlas
- Homologous match to J5_5J7L_016
- Geometric discrepancy: 0.1869
- The information below is about J5_5J7L_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6V3A|1|AN1|G|1672
6V3A|1|AN1|C|1673
6V3A|1|AN1|A|1674
6V3A|1|AN1|A|1675
6V3A|1|AN1|A|1676
6V3A|1|AN1|A|1677
6V3A|1|AN1|U|1678
6V3A|1|AN1|G|1679
6V3A|1|AN1|G|1680
*
6V3A|1|AN1|C|1704
6V3A|1|AN1|G|1705
*
6V3A|1|AN1|C|1747
6V3A|1|AN1|C|1748
*
6V3A|1|AN1|G|1752
6V3A|1|AN1|A|1753
6V3A|1|AN1|A|1754
6V3A|1|AN1|A|1755
6V3A|1|AN1|C|1756
6V3A|1|AN1|C|1757
6V3A|1|AN1|A|1758
6V3A|1|AN1|G|1759
6V3A|1|AN1|G|1760
*
6V3A|1|AN1|C|1984
6V3A|1|AN1|G|1985
6V3A|1|AN1|C|1986
Current chains
- Chain AN1
- 23s ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain J
- 50S ribosomal protein L14
- Chain O
- 50S ribosomal protein L19
- Chain sN1
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: