J5_6V3B_009
3D structure
- PDB id
- 6V3B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S in Empty state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.91 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 6V3B|1|sN1|A|105, 6V3B|1|sN1|C|348
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6V3B_009 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.1324
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.1
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6V3B|1|sN1|C|60
6V3B|1|sN1|A|61
6V3B|1|sN1|A|62
6V3B|1|sN1|G|63
*
6V3B|1|sN1|C|102
6V3B|1|sN1|G|103
6V3B|1|sN1|G|104
6V3B|1|sN1|A|105
6V3B|1|sN1|C|106
6V3B|1|sN1|G|107
6V3B|1|sN1|G|108
6V3B|1|sN1|G|109
*
6V3B|1|sN1|C|310
6V3B|1|sN1|A|311
6V3B|1|sN1|C|312
*
6V3B|1|sN1|G|333
6V3B|1|sN1|A|334
6V3B|1|sN1|C|335
*
6V3B|1|sN1|G|346
6V3B|1|sN1|G|347
6V3B|1|sN1|C|348
6V3B|1|sN1|A|349
6V3B|1|sN1|G|350
Current chains
- Chain sN1
- 16s Ribosomal RNA
Nearby chains
- Chain J
- 50S ribosomal protein L14
- Chain O
- 50S ribosomal protein L19
- Chain p
- 30S ribosomal protein S16
- Chain t
- 30S ribosomal protein S20
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