J5_6V3D_005
3D structure
- PDB id
- 6V3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC
- Length
- 37 nucleotides
- Bulged bases
- 6V3D|1|AN1|A|2058, 6V3D|1|AN1|A|2444, 6V3D|1|AN1|U|2445, 6V3D|1|AN1|G|2501, 6V3D|1|AN1|U|2605, 6V3D|1|AN1|C|2606
- QA status
- Modified nucleotides: 2MA, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6V3D|1|AN1|G|2053
6V3D|1|AN1|A|2054
6V3D|1|AN1|A|2055
6V3D|1|AN1|A|2056
6V3D|1|AN1|G|2057
6V3D|1|AN1|A|2058
6V3D|1|AN1|C|2059
6V3D|1|AN1|C|2060
*
6V3D|1|AN1|G|2442
6V3D|1|AN1|G|2443
6V3D|1|AN1|A|2444
6V3D|1|AN1|U|2445
6V3D|1|AN1|A|2446
6V3D|1|AN1|A|2447
6V3D|1|AN1|C|2448
6V3D|1|AN1|A|2449
*
6V3D|1|AN1|U|2496
6V3D|1|AN1|C|2497
6V3D|1|AN1|G|2498
6V3D|1|AN1|2MA|2499
6V3D|1|AN1|PSU|2500
6V3D|1|AN1|G|2501
6V3D|1|AN1|U|2502
6V3D|1|AN1|C|2503
*
6V3D|1|AN1|G|2578
6V3D|1|AN1|G|2579
6V3D|1|AN1|U|2580
6V3D|1|AN1|U|2581
6V3D|1|AN1|U|2582
6V3D|1|AN1|A|2583
6V3D|1|AN1|G|2584
*
6V3D|1|AN1|C|2602
6V3D|1|AN1|G|2603
6V3D|1|AN1|G|2604
6V3D|1|AN1|U|2605
6V3D|1|AN1|C|2606
6V3D|1|AN1|C|2607
Current chains
- Chain AN1
- 23s ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain D
- 50S ribosomal protein L3
- Chain E
- 50S ribosomal protein L4
- Chain K
- 50S ribosomal protein L15
- Chain L
- 50S ribosomal protein L16
- Chain R
- 50S ribosomal protein L22
- Chain Z
- 50S ribosomal protein L32
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