J5_6VU3_007

3D structure

PDB id

6VU3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

6VU3|1|a|U|1758, 6VU3|1|a|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6VU3_007 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0554

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6VU3|1|a|G|1674
6VU3|1|a|C|1675
6VU3|1|a|A|1676
6VU3|1|a|A|1677
6VU3|1|a|A|1678
6VU3|1|a|A|1679
6VU3|1|a|U|1680
6VU3|1|a|G|1681
6VU3|1|a|G|1682
*
6VU3|1|a|C|1706
6VU3|1|a|G|1707
*
6VU3|1|a|U|1751
6VU3|1|a|C|1752
*
6VU3|1|a|G|1756
6VU3|1|a|A|1757
6VU3|1|a|U|1758
6VU3|1|a|A|1759
6VU3|1|a|C|1760
6VU3|1|a|C|1761
6VU3|1|a|A|1762
6VU3|1|a|G|1763
6VU3|1|a|C|1764
*
6VU3|1|a|G|1988
6VU3|1|a|G|1989
6VU3|1|a|C|1990

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain t

50S ribosomal protein L14

Chain y

50S ribosomal protein L19