J5_6VWN_001

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGG*CGUG*CUUU*AAG*CAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VWN|1|1|C|36
6VWN|1|1|U|37
6VWN|1|1|G|38
6VWN|1|1|G|39
*
6VWN|1|1|C|403
6VWN|1|1|G|404
6VWN|1|1|U|405
6VWN|1|1|G|406
*
6VWN|1|1|C|436
6VWN|1|1|U|437
6VWN|1|1|U|438
6VWN|1|1|U|439
*
6VWN|1|1|A|498
6VWN|1|1|A|499
6VWN|1|1|G|500
*
6VWN|1|1|C|545
6VWN|1|1|A|546
6VWN|1|1|A|547
6VWN|1|1|G|548

Current chains

Chain 1

16S ribosomal RNA

Nearby chains

Chain c

30S ribosomal protein S4

Chain k

30S ribosomal protein S12