3D structure

PDB id
6VWN (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GAAAGACC*GGAUAACAG*CCUCGAUGUC*GGUUUAG*CGGUCC
Length
40 nucleotides
Bulged bases
6VWN|1|2|A|2448, 6VWN|1|2|U|2506, 6VWN|1|2|U|2585, 6VWN|1|2|U|2609, 6VWN|1|2|C|2610
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6VWN|1|2|G|2057
6VWN|1|2|A|2058
6VWN|1|2|A|2059
6VWN|1|2|A|2060
6VWN|1|2|G|2061
6VWN|1|2|A|2062
6VWN|1|2|C|2063
6VWN|1|2|C|2064
*
6VWN|1|2|G|2446
6VWN|1|2|G|2447
6VWN|1|2|A|2448
6VWN|1|2|U|2449
6VWN|1|2|A|2450
6VWN|1|2|A|2451
6VWN|1|2|C|2452
6VWN|1|2|A|2453
6VWN|1|2|G|2454
*
6VWN|1|2|C|2498
6VWN|1|2|C|2499
6VWN|1|2|U|2500
6VWN|1|2|C|2501
6VWN|1|2|G|2502
6VWN|1|2|A|2503
6VWN|1|2|U|2504
6VWN|1|2|G|2505
6VWN|1|2|U|2506
6VWN|1|2|C|2507
*
6VWN|1|2|G|2582
6VWN|1|2|G|2583
6VWN|1|2|U|2584
6VWN|1|2|U|2585
6VWN|1|2|U|2586
6VWN|1|2|A|2587
6VWN|1|2|G|2588
*
6VWN|1|2|C|2606
6VWN|1|2|G|2607
6VWN|1|2|G|2608
6VWN|1|2|U|2609
6VWN|1|2|C|2610
6VWN|1|2|C|2611

Current chains

Chain 2
23S ribosomal RNA

Nearby chains

Chain 5
Transfer RNA; tRNA
Chain A
50S ribosomal protein L2
Chain B
50S ribosomal protein L3
Chain C
50S ribosomal protein L4
Chain J
50S ribosomal protein L15
Chain K
50S ribosomal protein L16
Chain Q
50S ribosomal protein L22
Chain Y
50S ribosomal protein L32

Coloring options:

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