J5_6VWN_007
3D structure
- PDB id
- 6VWN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GAAAGACC*GGAUAACAG*CCUCGAUGUC*GGUUUAG*CGGUCC
- Length
- 40 nucleotides
- Bulged bases
- 6VWN|1|2|A|2448, 6VWN|1|2|U|2506, 6VWN|1|2|U|2585, 6VWN|1|2|U|2609, 6VWN|1|2|C|2610
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6VWN|1|2|G|2057
6VWN|1|2|A|2058
6VWN|1|2|A|2059
6VWN|1|2|A|2060
6VWN|1|2|G|2061
6VWN|1|2|A|2062
6VWN|1|2|C|2063
6VWN|1|2|C|2064
*
6VWN|1|2|G|2446
6VWN|1|2|G|2447
6VWN|1|2|A|2448
6VWN|1|2|U|2449
6VWN|1|2|A|2450
6VWN|1|2|A|2451
6VWN|1|2|C|2452
6VWN|1|2|A|2453
6VWN|1|2|G|2454
*
6VWN|1|2|C|2498
6VWN|1|2|C|2499
6VWN|1|2|U|2500
6VWN|1|2|C|2501
6VWN|1|2|G|2502
6VWN|1|2|A|2503
6VWN|1|2|U|2504
6VWN|1|2|G|2505
6VWN|1|2|U|2506
6VWN|1|2|C|2507
*
6VWN|1|2|G|2582
6VWN|1|2|G|2583
6VWN|1|2|U|2584
6VWN|1|2|U|2585
6VWN|1|2|U|2586
6VWN|1|2|A|2587
6VWN|1|2|G|2588
*
6VWN|1|2|C|2606
6VWN|1|2|G|2607
6VWN|1|2|G|2608
6VWN|1|2|U|2609
6VWN|1|2|C|2610
6VWN|1|2|C|2611
Current chains
- Chain 2
- 23S ribosomal RNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain A
- 50S ribosomal protein L2
- Chain B
- 50S ribosomal protein L3
- Chain C
- 50S ribosomal protein L4
- Chain J
- 50S ribosomal protein L15
- Chain K
- 50S ribosomal protein L16
- Chain Q
- 50S ribosomal protein L22
- Chain Y
- 50S ribosomal protein L32
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