J5_6VYS_007

3D structure

PDB id

6VYS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing a 21 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

6VYS|1|a|U|1758, 6VYS|1|a|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6VYS_007 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0554

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6VYS|1|a|G|1674
6VYS|1|a|C|1675
6VYS|1|a|A|1676
6VYS|1|a|A|1677
6VYS|1|a|A|1678
6VYS|1|a|A|1679
6VYS|1|a|U|1680
6VYS|1|a|G|1681
6VYS|1|a|G|1682
*
6VYS|1|a|C|1706
6VYS|1|a|G|1707
*
6VYS|1|a|U|1751
6VYS|1|a|C|1752
*
6VYS|1|a|G|1756
6VYS|1|a|A|1757
6VYS|1|a|U|1758
6VYS|1|a|A|1759
6VYS|1|a|C|1760
6VYS|1|a|C|1761
6VYS|1|a|A|1762
6VYS|1|a|G|1763
6VYS|1|a|C|1764
*
6VYS|1|a|G|1988
6VYS|1|a|G|1989
6VYS|1|a|C|1990

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain t

50S ribosomal protein L14

Chain y

50S ribosomal protein L19