3D structure

PDB id
6VYT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex A2 (TTC-A2) containing a 15 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site
Experimental method
ELECTRON MICROSCOPY
Resolution
14 Å

Loop

Sequence
CUGG*CGUG*CUUUC*GAAG*CAAG
Length
21 nucleotides
Bulged bases
6VYT|1|D|U|439
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6VYT_001 not in the Motif Atlas
Homologous match to J5_5J7L_001
Geometric discrepancy: 0.1101
The information below is about J5_5J7L_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_92941.1
Basepair signature
cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F
Number of instances in this motif group
1

Unit IDs

6VYT|1|D|C|36
6VYT|1|D|U|37
6VYT|1|D|G|38
6VYT|1|D|G|39
*
6VYT|1|D|C|403
6VYT|1|D|G|404
6VYT|1|D|U|405
6VYT|1|D|G|406
*
6VYT|1|D|C|436
6VYT|1|D|U|437
6VYT|1|D|U|438
6VYT|1|D|U|439
6VYT|1|D|C|440
*
6VYT|1|D|G|497
6VYT|1|D|A|498
6VYT|1|D|A|499
6VYT|1|D|G|500
*
6VYT|1|D|C|545
6VYT|1|D|A|546
6VYT|1|D|A|547
6VYT|1|D|G|548

Current chains

Chain D
16S rRNA

Nearby chains

Chain J
30S ribosomal protein S4
Chain R
30S ribosomal protein S12

Coloring options:


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