J5_6VYT_004

3D structure

PDB id

6VYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A2 (TTC-A2) containing a 15 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

14 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6VYT|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6VYT_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0381

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6VYT|1|a|C|47
6VYT|1|a|G|48
6VYT|1|a|A|49
6VYT|1|a|U|50
6VYT|1|a|G|51
6VYT|1|a|A|52
6VYT|1|a|A|53
6VYT|1|a|G|54
*
6VYT|1|a|C|116
6VYT|1|a|G|117
6VYT|1|a|A|118
6VYT|1|a|A|119
6VYT|1|a|U|120
6VYT|1|a|G|121
*
6VYT|1|a|C|130
6VYT|1|a|A|131
*
6VYT|1|a|U|148
6VYT|1|a|A|149
6VYT|1|a|U|150
*
6VYT|1|a|A|176
6VYT|1|a|G|177
6VYT|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34