J5_6VYU_002

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

6VYU|1|D|U|439

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6VYU_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0913

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6VYU|1|D|C|36
6VYU|1|D|U|37
6VYU|1|D|G|38
6VYU|1|D|G|39
*
6VYU|1|D|C|403
6VYU|1|D|G|404
6VYU|1|D|U|405
6VYU|1|D|G|406
*
6VYU|1|D|C|436
6VYU|1|D|U|437
6VYU|1|D|U|438
6VYU|1|D|U|439
6VYU|1|D|C|440
6VYU|1|D|A|441
6VYU|1|D|G|442
*
6VYU|1|D|C|492
6VYU|1|D|A|493
6VYU|1|D|G|494
6VYU|1|D|A|495
6VYU|1|D|A|496
6VYU|1|D|G|497
6VYU|1|D|A|498
6VYU|1|D|A|499
6VYU|1|D|G|500
*
6VYU|1|D|C|545
6VYU|1|D|A|546
6VYU|1|D|A|547
6VYU|1|D|G|548

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S4

Chain R

30S ribosomal protein S12