J5_6VYU_003

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

6VYU|1|D|A|109, 6VYU|1|D|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6VYU_003 not in the Motif Atlas

Homologous match to J5_5J7L_003

Geometric discrepancy: 0.0686

The information below is about J5_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6VYU|1|D|C|58
6VYU|1|D|A|59
6VYU|1|D|A|60
6VYU|1|D|G|61
*
6VYU|1|D|C|106
6VYU|1|D|G|107
6VYU|1|D|G|108
6VYU|1|D|A|109
6VYU|1|D|C|110
6VYU|1|D|G|111
6VYU|1|D|G|112
6VYU|1|D|G|113
*
6VYU|1|D|C|314
6VYU|1|D|A|315
6VYU|1|D|C|316
*
6VYU|1|D|G|337
6VYU|1|D|A|338
6VYU|1|D|C|339
*
6VYU|1|D|G|350
6VYU|1|D|G|351
6VYU|1|D|C|352
6VYU|1|D|A|353
6VYU|1|D|G|354

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20

Chain U

30S ribosomal protein S16

Chain t

50S ribosomal protein L14