J5_6VYU_004

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6VYU|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6VYU_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0381

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6VYU|1|a|C|47
6VYU|1|a|G|48
6VYU|1|a|A|49
6VYU|1|a|U|50
6VYU|1|a|G|51
6VYU|1|a|A|52
6VYU|1|a|A|53
6VYU|1|a|G|54
*
6VYU|1|a|C|116
6VYU|1|a|G|117
6VYU|1|a|A|118
6VYU|1|a|A|119
6VYU|1|a|U|120
6VYU|1|a|G|121
*
6VYU|1|a|C|130
6VYU|1|a|A|131
*
6VYU|1|a|U|148
6VYU|1|a|A|149
6VYU|1|a|U|150
*
6VYU|1|a|A|176
6VYU|1|a|G|177
6VYU|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34