J5_6VYW_002

3D structure

PDB id

6VYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C3 (TTC-C3) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

6VYW|1|D|U|439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6VYW_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0913

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6VYW|1|D|C|36
6VYW|1|D|U|37
6VYW|1|D|G|38
6VYW|1|D|G|39
*
6VYW|1|D|C|403
6VYW|1|D|G|404
6VYW|1|D|U|405
6VYW|1|D|G|406
*
6VYW|1|D|C|436
6VYW|1|D|U|437
6VYW|1|D|U|438
6VYW|1|D|U|439
6VYW|1|D|C|440
6VYW|1|D|A|441
6VYW|1|D|G|442
*
6VYW|1|D|C|492
6VYW|1|D|A|493
6VYW|1|D|G|494
6VYW|1|D|A|495
6VYW|1|D|A|496
6VYW|1|D|G|497
6VYW|1|D|A|498
6VYW|1|D|A|499
6VYW|1|D|G|500
*
6VYW|1|D|C|545
6VYW|1|D|A|546
6VYW|1|D|A|547
6VYW|1|D|G|548

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S4

Chain R

30S ribosomal protein S12