J5_6VYW_003

3D structure

PDB id

6VYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C3 (TTC-C3) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

6VYW|1|D|A|109, 6VYW|1|D|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6VYW_003 not in the Motif Atlas

Homologous match to J5_5J7L_003

Geometric discrepancy: 0.0686

The information below is about J5_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6VYW|1|D|C|58
6VYW|1|D|A|59
6VYW|1|D|A|60
6VYW|1|D|G|61
*
6VYW|1|D|C|106
6VYW|1|D|G|107
6VYW|1|D|G|108
6VYW|1|D|A|109
6VYW|1|D|C|110
6VYW|1|D|G|111
6VYW|1|D|G|112
6VYW|1|D|G|113
*
6VYW|1|D|C|314
6VYW|1|D|A|315
6VYW|1|D|C|316
*
6VYW|1|D|G|337
6VYW|1|D|A|338
6VYW|1|D|C|339
*
6VYW|1|D|G|350
6VYW|1|D|G|351
6VYW|1|D|C|352
6VYW|1|D|A|353
6VYW|1|D|G|354

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20

Chain U

30S ribosomal protein S16

Chain t

50S ribosomal protein L14