J5_6VYX_002

3D structure

PDB id

6VYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

6VYX|1|D|U|439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6VYX_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0913

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6VYX|1|D|C|36
6VYX|1|D|U|37
6VYX|1|D|G|38
6VYX|1|D|G|39
*
6VYX|1|D|C|403
6VYX|1|D|G|404
6VYX|1|D|U|405
6VYX|1|D|G|406
*
6VYX|1|D|C|436
6VYX|1|D|U|437
6VYX|1|D|U|438
6VYX|1|D|U|439
6VYX|1|D|C|440
6VYX|1|D|A|441
6VYX|1|D|G|442
*
6VYX|1|D|C|492
6VYX|1|D|A|493
6VYX|1|D|G|494
6VYX|1|D|A|495
6VYX|1|D|A|496
6VYX|1|D|G|497
6VYX|1|D|A|498
6VYX|1|D|A|499
6VYX|1|D|G|500
*
6VYX|1|D|C|545
6VYX|1|D|A|546
6VYX|1|D|A|547
6VYX|1|D|G|548

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S4

Chain R

30S ribosomal protein S12