J5_6VYX_004

3D structure

PDB id

6VYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6VYX|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6VYX_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0382

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6VYX|1|a|C|47
6VYX|1|a|G|48
6VYX|1|a|A|49
6VYX|1|a|U|50
6VYX|1|a|G|51
6VYX|1|a|A|52
6VYX|1|a|A|53
6VYX|1|a|G|54
*
6VYX|1|a|C|116
6VYX|1|a|G|117
6VYX|1|a|A|118
6VYX|1|a|A|119
6VYX|1|a|U|120
6VYX|1|a|G|121
*
6VYX|1|a|C|130
6VYX|1|a|A|131
*
6VYX|1|a|U|148
6VYX|1|a|A|149
6VYX|1|a|U|150
*
6VYX|1|a|A|176
6VYX|1|a|G|177
6VYX|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34