J5_6VYY_002

3D structure

PDB id

6VYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

6VYY|1|D|U|439

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6VYY_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0913

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6VYY|1|D|C|36
6VYY|1|D|U|37
6VYY|1|D|G|38
6VYY|1|D|G|39
*
6VYY|1|D|C|403
6VYY|1|D|G|404
6VYY|1|D|U|405
6VYY|1|D|G|406
*
6VYY|1|D|C|436
6VYY|1|D|U|437
6VYY|1|D|U|438
6VYY|1|D|U|439
6VYY|1|D|C|440
6VYY|1|D|A|441
6VYY|1|D|G|442
*
6VYY|1|D|C|492
6VYY|1|D|A|493
6VYY|1|D|G|494
6VYY|1|D|A|495
6VYY|1|D|A|496
6VYY|1|D|G|497
6VYY|1|D|A|498
6VYY|1|D|A|499
6VYY|1|D|G|500
*
6VYY|1|D|C|545
6VYY|1|D|A|546
6VYY|1|D|A|547
6VYY|1|D|G|548

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S4

Chain R

30S ribosomal protein S12