J5_6VYY_003

3D structure

PDB id

6VYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

6VYY|1|D|A|109, 6VYY|1|D|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6VYY_003 not in the Motif Atlas

Homologous match to J5_5J7L_003

Geometric discrepancy: 0.0686

The information below is about J5_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6VYY|1|D|C|58
6VYY|1|D|A|59
6VYY|1|D|A|60
6VYY|1|D|G|61
*
6VYY|1|D|C|106
6VYY|1|D|G|107
6VYY|1|D|G|108
6VYY|1|D|A|109
6VYY|1|D|C|110
6VYY|1|D|G|111
6VYY|1|D|G|112
6VYY|1|D|G|113
*
6VYY|1|D|C|314
6VYY|1|D|A|315
6VYY|1|D|C|316
*
6VYY|1|D|G|337
6VYY|1|D|A|338
6VYY|1|D|C|339
*
6VYY|1|D|G|350
6VYY|1|D|G|351
6VYY|1|D|C|352
6VYY|1|D|A|353
6VYY|1|D|G|354

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20

Chain U

30S ribosomal protein S16

Chain t

50S ribosomal protein L14