J5_6VYZ_002

3D structure

PDB id

6VYZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C6 (TTC-C6) containing mRNA with a 21 nt long spacer, NusA, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

6VYZ|1|D|U|439

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6VYZ_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0913

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6VYZ|1|D|C|36
6VYZ|1|D|U|37
6VYZ|1|D|G|38
6VYZ|1|D|G|39
*
6VYZ|1|D|C|403
6VYZ|1|D|G|404
6VYZ|1|D|U|405
6VYZ|1|D|G|406
*
6VYZ|1|D|C|436
6VYZ|1|D|U|437
6VYZ|1|D|U|438
6VYZ|1|D|U|439
6VYZ|1|D|C|440
6VYZ|1|D|A|441
6VYZ|1|D|G|442
*
6VYZ|1|D|C|492
6VYZ|1|D|A|493
6VYZ|1|D|G|494
6VYZ|1|D|A|495
6VYZ|1|D|A|496
6VYZ|1|D|G|497
6VYZ|1|D|A|498
6VYZ|1|D|A|499
6VYZ|1|D|G|500
*
6VYZ|1|D|C|545
6VYZ|1|D|A|546
6VYZ|1|D|A|547
6VYZ|1|D|G|548

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S4

Chain R

30S ribosomal protein S12