J5_6VZ2_007

3D structure

PDB id

6VZ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D1 (TTC-D1) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

6VZ2|1|a|U|1758, 6VZ2|1|a|G|1763

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6VZ2_007 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0554

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6VZ2|1|a|G|1674
6VZ2|1|a|C|1675
6VZ2|1|a|A|1676
6VZ2|1|a|A|1677
6VZ2|1|a|A|1678
6VZ2|1|a|A|1679
6VZ2|1|a|U|1680
6VZ2|1|a|G|1681
6VZ2|1|a|G|1682
*
6VZ2|1|a|C|1706
6VZ2|1|a|G|1707
*
6VZ2|1|a|U|1751
6VZ2|1|a|C|1752
*
6VZ2|1|a|G|1756
6VZ2|1|a|A|1757
6VZ2|1|a|U|1758
6VZ2|1|a|A|1759
6VZ2|1|a|C|1760
6VZ2|1|a|C|1761
6VZ2|1|a|A|1762
6VZ2|1|a|G|1763
6VZ2|1|a|C|1764
*
6VZ2|1|a|G|1988
6VZ2|1|a|G|1989
6VZ2|1|a|C|1990

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain t

50S ribosomal protein L14

Chain y

50S ribosomal protein L19