J5_6VZ3_001

3D structure

PDB id

6VZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D2 (TTC-D2) containing mRNA with a 27 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

6VZ3|1|D|U|439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6VZ3_001 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.1101

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6VZ3|1|D|C|36
6VZ3|1|D|U|37
6VZ3|1|D|G|38
6VZ3|1|D|G|39
*
6VZ3|1|D|C|403
6VZ3|1|D|G|404
6VZ3|1|D|U|405
6VZ3|1|D|G|406
*
6VZ3|1|D|C|436
6VZ3|1|D|U|437
6VZ3|1|D|U|438
6VZ3|1|D|U|439
6VZ3|1|D|C|440
*
6VZ3|1|D|G|497
6VZ3|1|D|A|498
6VZ3|1|D|A|499
6VZ3|1|D|G|500
*
6VZ3|1|D|C|545
6VZ3|1|D|A|546
6VZ3|1|D|A|547
6VZ3|1|D|G|548

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S4

Chain R

30S ribosomal protein S12