3D structure

PDB id
6VZ3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex D2 (TTC-D2) containing mRNA with a 27 nt long spacer
Experimental method
ELECTRON MICROSCOPY
Resolution
8.9 Å

Loop

Sequence
CUGG*CGUG*CUUUC*GAAG*CAAG
Length
21 nucleotides
Bulged bases
6VZ3|1|D|U|439
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6VZ3_001 not in the Motif Atlas
Homologous match to J5_5J7L_001
Geometric discrepancy: 0.1101
The information below is about J5_5J7L_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_92941.1
Basepair signature
cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F
Number of instances in this motif group
1

Unit IDs

6VZ3|1|D|C|36
6VZ3|1|D|U|37
6VZ3|1|D|G|38
6VZ3|1|D|G|39
*
6VZ3|1|D|C|403
6VZ3|1|D|G|404
6VZ3|1|D|U|405
6VZ3|1|D|G|406
*
6VZ3|1|D|C|436
6VZ3|1|D|U|437
6VZ3|1|D|U|438
6VZ3|1|D|U|439
6VZ3|1|D|C|440
*
6VZ3|1|D|G|497
6VZ3|1|D|A|498
6VZ3|1|D|A|499
6VZ3|1|D|G|500
*
6VZ3|1|D|C|545
6VZ3|1|D|A|546
6VZ3|1|D|A|547
6VZ3|1|D|G|548

Current chains

Chain D
16S rRNA

Nearby chains

Chain J
30S ribosomal protein S4
Chain R
30S ribosomal protein S12

Coloring options:


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